Sample interview questions: Have you utilized any metatranscriptomic mapping algorithms or tools for taxonomic and functional classification? If so, which ones?
Sample answer:
- Kraken2: Rapid and accurate species-level taxonomic classification of metagenomic and metatranscriptomic reads.
- MetaPhlAn3: Profiles relative abundance of taxonomic groups from metagenomes and metatranscriptomes.
- Bracken: Places reads into taxonomic bins with high accuracy and completeness even at very low taxonomic ranks.
- LCA: Lowest common ancestor algorithm for assigning taxonomy to reads.
- DIAMOND: Aligner for annotating sequences from metagenomes and metatranscriptomes against databases such as KEGG, GO, or UniProt.
- HUMAnN2… Read full answer
Source: https://hireabo.com/job/5_1_45/Bioinformatics%20Specialist